J4_8HTZ_004
3D structure
- PDB id
- 8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUCG*CAC*GUAACA*UA
- Length
- 15 nucleotides
- Bulged bases
- 8HTZ|1|V|U|8, 8HTZ|1|V|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8HTZ_004 not in the Motif Atlas
- Homologous match to J4_5HR6_001
- Geometric discrepancy: 0.189
- The information below is about J4_5HR6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8HTZ|1|V|U|7
8HTZ|1|V|U|8
8HTZ|1|V|C|9
8HTZ|1|V|G|10
*
8HTZ|1|V|C|26
8HTZ|1|V|A|27
8HTZ|1|V|C|28
*
8HTZ|1|V|G|44
8HTZ|1|V|U|45
8HTZ|1|V|A|46
8HTZ|1|V|A|47
8HTZ|1|V|C|48
8HTZ|1|V|A|49
*
8HTZ|1|V|U|65
8HTZ|1|V|A|66
Current chains
- Chain V
- P-site tRNA_Glu
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain X
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: