3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8HTZ_007 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0579
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

8HTZ|1|a|G|297
8HTZ|1|a|G|298
8HTZ|1|a|A|299
8HTZ|1|a|A|300
8HTZ|1|a|G|301
*
8HTZ|1|a|C|316
8HTZ|1|a|G|317
8HTZ|1|a|C|318
8HTZ|1|a|G|319
*
8HTZ|1|a|C|323
8HTZ|1|a|A|324
8HTZ|1|a|G|325
*
8HTZ|1|a|C|337
8HTZ|1|a|G|338
8HTZ|1|a|U|339
8HTZ|1|a|A|340
8HTZ|1|a|C|341

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain t
50S ribosomal protein L24

Coloring options:


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