J4_8HTZ_007

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HTZ_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0579

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8HTZ|1|a|G|297
8HTZ|1|a|G|298
8HTZ|1|a|A|299
8HTZ|1|a|A|300
8HTZ|1|a|G|301
*
8HTZ|1|a|C|316
8HTZ|1|a|G|317
8HTZ|1|a|C|318
8HTZ|1|a|G|319
*
8HTZ|1|a|C|323
8HTZ|1|a|A|324
8HTZ|1|a|G|325
*
8HTZ|1|a|C|337
8HTZ|1|a|G|338
8HTZ|1|a|U|339
8HTZ|1|a|A|340
8HTZ|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24