J4_8HTZ_010

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8HTZ|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HTZ_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0439

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8HTZ|1|a|G|1310
8HTZ|1|a|G|1311
8HTZ|1|a|U|1312
8HTZ|1|a|U|1313
8HTZ|1|a|C|1314
*
8HTZ|1|a|G|1338
8HTZ|1|a|G|1339
8HTZ|1|a|U|1340
8HTZ|1|a|G|1341
8HTZ|1|a|A|1342
8HTZ|1|a|G|1343
*
8HTZ|1|a|C|1404
8HTZ|1|a|U|1405
*
8HTZ|1|a|A|1597
8HTZ|1|a|A|1598
8HTZ|1|a|U|1599
8HTZ|1|a|C|1600
8HTZ|1|a|G|1601
8HTZ|1|a|U|1602
8HTZ|1|a|A|1603
8HTZ|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23