3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8HU1_007 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0716
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

8HU1|1|a|G|297
8HU1|1|a|G|298
8HU1|1|a|A|299
8HU1|1|a|A|300
8HU1|1|a|G|301
*
8HU1|1|a|C|316
8HU1|1|a|G|317
8HU1|1|a|C|318
8HU1|1|a|G|319
*
8HU1|1|a|C|323
8HU1|1|a|A|324
8HU1|1|a|G|325
*
8HU1|1|a|C|337
8HU1|1|a|G|338
8HU1|1|a|U|339
8HU1|1|a|A|340
8HU1|1|a|C|341

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain t
50S ribosomal protein L24

Coloring options:


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