J4_8HU1_007

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HU1_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0716

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8HU1|1|a|G|297
8HU1|1|a|G|298
8HU1|1|a|A|299
8HU1|1|a|A|300
8HU1|1|a|G|301
*
8HU1|1|a|C|316
8HU1|1|a|G|317
8HU1|1|a|C|318
8HU1|1|a|G|319
*
8HU1|1|a|C|323
8HU1|1|a|A|324
8HU1|1|a|G|325
*
8HU1|1|a|C|337
8HU1|1|a|G|338
8HU1|1|a|U|339
8HU1|1|a|A|340
8HU1|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24