J4_8HU1_010

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8HU1|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HU1_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0666

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8HU1|1|a|G|1310
8HU1|1|a|G|1311
8HU1|1|a|U|1312
8HU1|1|a|U|1313
8HU1|1|a|C|1314
*
8HU1|1|a|G|1338
8HU1|1|a|G|1339
8HU1|1|a|U|1340
8HU1|1|a|G|1341
8HU1|1|a|A|1342
8HU1|1|a|G|1343
*
8HU1|1|a|C|1404
8HU1|1|a|U|1405
*
8HU1|1|a|A|1597
8HU1|1|a|A|1598
8HU1|1|a|U|1599
8HU1|1|a|C|1600
8HU1|1|a|G|1601
8HU1|1|a|U|1602
8HU1|1|a|A|1603
8HU1|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23