J4_8I9T_002

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAG*CGCC*GAG*CGUAUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9T|1|C1|U|179
8I9T|1|C1|G|180
8I9T|1|C1|A|181
8I9T|1|C1|G|182
*
8I9T|1|C1|C|198
8I9T|1|C1|G|199
8I9T|1|C1|C|200
8I9T|1|C1|C|201
*
8I9T|1|C1|G|205
8I9T|1|C1|A|206
8I9T|1|C1|G|207
*
8I9T|1|C1|C|219
8I9T|1|C1|G|220
8I9T|1|C1|U|221
8I9T|1|C1|A|222
8I9T|1|C1|U|223
8I9T|1|C1|A|224

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CR

Nucleolar protein 16

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein