J4_8I9Y_005
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GGUUAG*CC*GGUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 8I9Y|1|C1|U|1505
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9Y|1|C1|U|1477
8I9Y|1|C1|C|1478
*
8I9Y|1|C1|G|1502
8I9Y|1|C1|G|1503
8I9Y|1|C1|U|1504
8I9Y|1|C1|U|1505
8I9Y|1|C1|A|1506
8I9Y|1|C1|G|1507
*
8I9Y|1|C1|C|1593
8I9Y|1|C1|C|1594
*
8I9Y|1|C1|G|1808
8I9Y|1|C1|G|1809
8I9Y|1|C1|U|1810
8I9Y|1|C1|C|1811
8I9Y|1|C1|G|1812
8I9Y|1|C1|U|1813
8I9Y|1|C1|A|1814
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CJ
- Pescadillo homolog
- Chain LR
- Ribosomal protein L19
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lk
- 60S ribosomal protein L38-like protein
- Chain Ll
- 60S ribosomal protein L39
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