J4_8I9Z_006

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8I9Z_006 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.145

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8I9Z|1|C1|G|1653
8I9Z|1|C1|G|1654
*
8I9Z|1|C1|C|1672
8I9Z|1|C1|U|1673
*
8I9Z|1|C1|A|1731
8I9Z|1|C1|G|1732
*
8I9Z|1|C1|U|1751
8I9Z|1|C1|C|1752

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LU

60S ribosomal protein L22-like protein

Chain Lg

Ribosomal protein l34-like protein

Chain Lk

60S ribosomal protein L38-like protein