J4_8IDT_006

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8IDT|1|2|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDT|1|2|G|2618
8IDT|1|2|G|2619
*
8IDT|1|2|U|2637
8IDT|1|2|G|2638
8IDT|1|2|U|2639
8IDT|1|2|G|2640
8IDT|1|2|A|2641
8IDT|1|2|A|2642
*
8IDT|1|2|U|2692
8IDT|1|2|G|2693
8IDT|1|2|G|2694
8IDT|1|2|A|2695
8IDT|1|2|A|2696
8IDT|1|2|A|2697
8IDT|1|2|G|2698
*
8IDT|1|2|U|2718
8IDT|1|2|C|2719

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain O

60S ribosomal protein L38

Chain a

60S ribosomal protein L19

Chain d

60S ribosomal protein L22