J4_8IDY_002

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8IDY|1|2|C|216, 8IDY|1|2|C|217, 8IDY|1|2|A|218, 8IDY|1|2|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDY|1|2|C|196
8IDY|1|2|A|197
8IDY|1|2|A|198
8IDY|1|2|G|199
*
8IDY|1|2|C|215
8IDY|1|2|C|216
8IDY|1|2|C|217
8IDY|1|2|A|218
8IDY|1|2|G|219
8IDY|1|2|C|220
8IDY|1|2|C|221
8IDY|1|2|C|222
*
8IDY|1|2|G|226
8IDY|1|2|A|227
8IDY|1|2|C|228
*
8IDY|1|2|G|240
8IDY|1|2|G|241
8IDY|1|2|U|242
8IDY|1|2|A|243
8IDY|1|2|G|244

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain h

60S ribosomal protein L26