J4_8IE3_006

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUG*CAGUG*CGACC*GAGGGUGUAAAU

Length

27 nucleotides

Bulged bases

8IE3|1|2|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IE3|1|2|A|2551
8IE3|1|2|G|2552
8IE3|1|2|A|2553
8IE3|1|2|U|2554
8IE3|1|2|G|2555
*
8IE3|1|2|C|2572
8IE3|1|2|A|2573
8IE3|1|2|G|2574
8IE3|1|2|U|2575
8IE3|1|2|G|2576
*
8IE3|1|2|C|2585
8IE3|1|2|G|2586
8IE3|1|2|A|2587
8IE3|1|2|C|2588
8IE3|1|2|C|2589
*
8IE3|1|2|G|2756
8IE3|1|2|A|2757
8IE3|1|2|G|2758
8IE3|1|2|G|2759
8IE3|1|2|G|2760
8IE3|1|2|U|2761
8IE3|1|2|G|2762
8IE3|1|2|U|2763
8IE3|1|2|A|2764
8IE3|1|2|A|2765
8IE3|1|2|A|2766
8IE3|1|2|U|2767

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain i

60S ribosomal protein L27