J4_8IFB_002
3D structure
- PDB id
- 8IFB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8IFB|1|6|4SU|8, 8IFB|1|6|U|48, 8IFB|1|6|C|49
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IFB_002 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.1936
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8IFB|1|6|G|7
8IFB|1|6|4SU|8
8IFB|1|6|G|9
8IFB|1|6|G|10
*
8IFB|1|6|C|26
8IFB|1|6|G|27
8IFB|1|6|U|28
*
8IFB|1|6|A|44
8IFB|1|6|A|45
8IFB|1|6|G|46
8IFB|1|6|A|47
8IFB|1|6|U|48
8IFB|1|6|C|49
8IFB|1|6|G|50
*
8IFB|1|6|C|66
8IFB|1|6|C|67
Current chains
- Chain 6
- P-site tRNA-fMet
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: