J4_8IFB_007

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFB_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0427

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8IFB|1|a|G|297
8IFB|1|a|G|298
8IFB|1|a|A|299
8IFB|1|a|A|300
8IFB|1|a|G|301
*
8IFB|1|a|C|316
8IFB|1|a|G|317
8IFB|1|a|C|318
8IFB|1|a|G|319
*
8IFB|1|a|C|323
8IFB|1|a|A|324
8IFB|1|a|G|325
*
8IFB|1|a|C|337
8IFB|1|a|G|338
8IFB|1|a|U|339
8IFB|1|a|A|340
8IFB|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24