J4_8IFB_008

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8IFB|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFB_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1166

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8IFB|1|a|C|601
8IFB|1|a|A|602
8IFB|1|a|A|603
8IFB|1|a|G|604
*
8IFB|1|a|C|624
8IFB|1|a|G|625
8IFB|1|a|A|626
8IFB|1|a|A|627
8IFB|1|a|G|628
*
8IFB|1|a|C|635
8IFB|1|a|G|636
8IFB|1|a|A|637
8IFB|1|a|G|638
*
8IFB|1|a|C|650
8IFB|1|a|G|651
8IFB|1|a|U|652
8IFB|1|a|U|653
8IFB|1|a|A|654
8IFB|1|a|A|655
8IFB|1|a|G|656

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15