J4_8IFC_001

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(G7M)UCC*GU

Length

16 nucleotides

Bulged bases

8IFC|1|5|4SU|8, 8IFC|1|5|U|47, 8IFC|1|5|C|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFC_001 not in the Motif Atlas

Homologous match to J4_6UFG_001

Geometric discrepancy: 0.2207

The information below is about J4_6UFG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8IFC|1|5|A|7
8IFC|1|5|4SU|8
8IFC|1|5|A|9
8IFC|1|5|G|10
*
8IFC|1|5|C|25
8IFC|1|5|A|26
8IFC|1|5|G|27
*
8IFC|1|5|C|43
8IFC|1|5|G|44
8IFC|1|5|U|45
8IFC|1|5|G7M|46
8IFC|1|5|U|47
8IFC|1|5|C|48
8IFC|1|5|C|49
*
8IFC|1|5|G|65
8IFC|1|5|U|66

Current chains

Chain 5

A-site tRNA-Phe

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA