J4_8IFC_007

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFC_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.045

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8IFC|1|a|G|297
8IFC|1|a|G|298
8IFC|1|a|A|299
8IFC|1|a|A|300
8IFC|1|a|G|301
*
8IFC|1|a|C|316
8IFC|1|a|G|317
8IFC|1|a|C|318
8IFC|1|a|G|319
*
8IFC|1|a|C|323
8IFC|1|a|A|324
8IFC|1|a|G|325
*
8IFC|1|a|C|337
8IFC|1|a|G|338
8IFC|1|a|U|339
8IFC|1|a|A|340
8IFC|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24