J4_8IFC_008

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8IFC|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFC_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1262

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8IFC|1|a|C|601
8IFC|1|a|A|602
8IFC|1|a|A|603
8IFC|1|a|G|604
*
8IFC|1|a|C|624
8IFC|1|a|G|625
8IFC|1|a|A|626
8IFC|1|a|A|627
8IFC|1|a|G|628
*
8IFC|1|a|C|635
8IFC|1|a|G|636
8IFC|1|a|A|637
8IFC|1|a|G|638
*
8IFC|1|a|C|650
8IFC|1|a|G|651
8IFC|1|a|U|652
8IFC|1|a|U|653
8IFC|1|a|A|654
8IFC|1|a|A|655
8IFC|1|a|G|656

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15