J4_8IFC_010

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8IFC|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFC_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0463

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8IFC|1|a|G|1310
8IFC|1|a|G|1311
8IFC|1|a|U|1312
8IFC|1|a|U|1313
8IFC|1|a|C|1314
*
8IFC|1|a|G|1338
8IFC|1|a|G|1339
8IFC|1|a|U|1340
8IFC|1|a|G|1341
8IFC|1|a|A|1342
8IFC|1|a|G|1343
*
8IFC|1|a|C|1404
8IFC|1|a|U|1405
*
8IFC|1|a|A|1597
8IFC|1|a|A|1598
8IFC|1|a|U|1599
8IFC|1|a|C|1600
8IFC|1|a|G|1601
8IFC|1|a|U|1602
8IFC|1|a|A|1603
8IFC|1|a|C|1604

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23