J4_8IFD_002
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CAAG*CCCAGCCC*GAC*GGUAG
- Length
- 20 nucleotides
- Bulged bases
- 8IFD|1|1A|C|216, 8IFD|1|1A|C|217, 8IFD|1|1A|A|218, 8IFD|1|1A|G|219
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFD|1|1A|C|196
8IFD|1|1A|A|197
8IFD|1|1A|A|198
8IFD|1|1A|G|199
*
8IFD|1|1A|C|215
8IFD|1|1A|C|216
8IFD|1|1A|C|217
8IFD|1|1A|A|218
8IFD|1|1A|G|219
8IFD|1|1A|C|220
8IFD|1|1A|C|221
8IFD|1|1A|C|222
*
8IFD|1|1A|G|226
8IFD|1|1A|A|227
8IFD|1|1A|C|228
*
8IFD|1|1A|G|240
8IFD|1|1A|G|241
8IFD|1|1A|U|242
8IFD|1|1A|A|243
8IFD|1|1A|G|244
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2S
- 60S ribosomal protein L26
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