J4_8IFD_006

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8IFD|1|1A|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|G|2618
8IFD|1|1A|G|2619
*
8IFD|1|1A|U|2637
8IFD|1|1A|G|2638
8IFD|1|1A|U|2639
8IFD|1|1A|G|2640
8IFD|1|1A|A|2641
8IFD|1|1A|A|2642
*
8IFD|1|1A|U|2692
8IFD|1|1A|G|2693
8IFD|1|1A|G|2694
8IFD|1|1A|A|2695
8IFD|1|1A|A|2696
8IFD|1|1A|A|2697
8IFD|1|1A|G|2698
*
8IFD|1|1A|U|2718
8IFD|1|1A|C|2719

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2O

60S ribosomal protein L22

Chain 2a

60S ribosomal protein L34

Chain 2e

60S ribosomal protein L38