J4_8IFD_009

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

8IFD|1|1A|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|C|4231
8IFD|1|1A|U|4232
8IFD|1|1A|A|4233
8IFD|1|1A|A|4234
8IFD|1|1A|G|4235
*
8IFD|1|1A|U|4289
8IFD|1|1A|U|4290
8IFD|1|1A|G|4291
*
8IFD|1|1A|C|4318
8IFD|1|1A|C|4319
*
8IFD|1|1A|G|4328
8IFD|1|1A|G|4329
8IFD|1|1A|G|4330

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1G

60S ribosomal protein L5

Chain 2N

60S ribosomal protein L21

Chain 2i

60S ribosomal protein L36a