J4_8IFD_014

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8IFD|1|1A|G|1271, 8IFD|1|1A|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|C|981
8IFD|1|1A|U|982
8IFD|1|1A|C|983
*
8IFD|1|1A|G|1070
8IFD|1|1A|C|1071
8IFD|1|1A|C|1072
*
8IFD|1|1A|G|1240
8IFD|1|1A|C|1241
8IFD|1|1A|G|1242
8IFD|1|1A|C|1243
*
8IFD|1|1A|G|1268
8IFD|1|1A|G|1269
8IFD|1|1A|A|1270
8IFD|1|1A|G|1271
8IFD|1|1A|C|1272
8IFD|1|1A|G|1273

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2A

60S ribosomal protein L7

Chain 2V

60S ribosomal protein L29