J4_8IFE_002

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8IFE|1|1A|C|216, 8IFE|1|1A|C|217, 8IFE|1|1A|A|218, 8IFE|1|1A|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|C|196
8IFE|1|1A|A|197
8IFE|1|1A|A|198
8IFE|1|1A|G|199
*
8IFE|1|1A|C|215
8IFE|1|1A|C|216
8IFE|1|1A|C|217
8IFE|1|1A|A|218
8IFE|1|1A|G|219
8IFE|1|1A|C|220
8IFE|1|1A|C|221
8IFE|1|1A|C|222
*
8IFE|1|1A|G|226
8IFE|1|1A|A|227
8IFE|1|1A|C|228
*
8IFE|1|1A|G|240
8IFE|1|1A|G|241
8IFE|1|1A|U|242
8IFE|1|1A|A|243
8IFE|1|1A|G|244

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2S

60S ribosomal protein L26