J4_8IFE_009

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

8IFE|1|1A|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|C|4231
8IFE|1|1A|U|4232
8IFE|1|1A|A|4233
8IFE|1|1A|A|4234
8IFE|1|1A|G|4235
*
8IFE|1|1A|U|4289
8IFE|1|1A|U|4290
8IFE|1|1A|G|4291
*
8IFE|1|1A|C|4318
8IFE|1|1A|C|4319
*
8IFE|1|1A|G|4328
8IFE|1|1A|G|4329
8IFE|1|1A|G|4330

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1G

60S ribosomal protein L5

Chain 2N

60S ribosomal protein L21

Chain 2i

60S ribosomal protein L36a