3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
(OMC)AAAUAU*AGG*CAUGUU*AG
Length
18 nucleotides
Bulged bases
8INE|1|2|A|2366, 8INE|1|2|U|2369, 8INE|1|2|U|2828
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8INE|1|2|OMC|2365
8INE|1|2|A|2366
8INE|1|2|A|2367
8INE|1|2|A|2368
8INE|1|2|U|2369
8INE|1|2|A|2370
8INE|1|2|U|2371
*
8INE|1|2|A|2389
8INE|1|2|G|2390
8INE|1|2|G|2391
*
8INE|1|2|C|2824
8INE|1|2|A|2825
8INE|1|2|U|2826
8INE|1|2|G|2827
8INE|1|2|U|2828
8INE|1|2|U|2829
*
8INE|1|2|A|3856
8INE|1|2|G|3857

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain 9
Zinc finger protein 593
Chain Y
60S ribosomal protein L17
Chain a
60S ribosomal protein L19
Chain j
60S ribosomal protein L31

Coloring options:

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