J4_8INK_002

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|C|196
8INK|1|2|A|197
8INK|1|2|A|198
8INK|1|2|G|199
*
8INK|1|2|C|215
8INK|1|2|C|216
8INK|1|2|C|217
8INK|1|2|A|218
8INK|1|2|G|219
8INK|1|2|C|220
8INK|1|2|C|221
8INK|1|2|C|222
*
8INK|1|2|G|226
8INK|1|2|A|227
8INK|1|2|C|228
*
8INK|1|2|G|240
8INK|1|2|G|241
8INK|1|2|U|242
8INK|1|2|A|243
8INK|1|2|G|244

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain h

60S ribosomal protein L26