J4_8INK_003

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCC*GGCC*GCGC*GGAGCG

Length

18 nucleotides

Bulged bases

8INK|1|2|G|1269, 8INK|1|2|A|1270, 8INK|1|2|G|1271, 8INK|1|2|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|C|981
8INK|1|2|U|982
8INK|1|2|C|983
8INK|1|2|C|984
*
8INK|1|2|G|1069
8INK|1|2|G|1070
8INK|1|2|C|1071
8INK|1|2|C|1072
*
8INK|1|2|G|1240
8INK|1|2|C|1241
8INK|1|2|G|1242
8INK|1|2|C|1243
*
8INK|1|2|G|1268
8INK|1|2|G|1269
8INK|1|2|A|1270
8INK|1|2|G|1271
8INK|1|2|C|1272
8INK|1|2|G|1273

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L29

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7