J4_8IPD_002

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|C|196
8IPD|1|2|A|197
8IPD|1|2|A|198
8IPD|1|2|G|199
*
8IPD|1|2|C|215
8IPD|1|2|C|216
8IPD|1|2|C|217
8IPD|1|2|A|218
8IPD|1|2|G|219
8IPD|1|2|C|220
8IPD|1|2|C|221
8IPD|1|2|C|222
*
8IPD|1|2|G|226
8IPD|1|2|A|227
8IPD|1|2|C|228
*
8IPD|1|2|G|240
8IPD|1|2|G|241
8IPD|1|2|U|242
8IPD|1|2|A|243
8IPD|1|2|G|244

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain h

60S ribosomal protein L26