J4_8IPD_006

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8IPD|1|2|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|G|2618
8IPD|1|2|G|2619
*
8IPD|1|2|U|2637
8IPD|1|2|G|2638
8IPD|1|2|U|2639
8IPD|1|2|G|2640
8IPD|1|2|A|2641
8IPD|1|2|A|2642
*
8IPD|1|2|U|2692
8IPD|1|2|G|2693
8IPD|1|2|G|2694
8IPD|1|2|A|2695
8IPD|1|2|A|2696
8IPD|1|2|A|2697
8IPD|1|2|G|2698
*
8IPD|1|2|U|2718
8IPD|1|2|C|2719

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain O

60S ribosomal protein L38

Chain a

60S ribosomal protein L19

Chain d

60S ribosomal protein L22