J4_8IR1_008

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IR1_008 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.2468

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

8IR1|1|2|G|3634
8IR1|1|2|A|3635
8IR1|1|2|C|3636
8IR1|1|2|U|3637
8IR1|1|2|G|3638
*
8IR1|1|2|C|3650
8IR1|1|2|A|3651
8IR1|1|2|A|3652
8IR1|1|2|A|3653
8IR1|1|2|G|3654
*
8IR1|1|2|U|3690
8IR1|1|2|G|3691
8IR1|1|2|A|3692
8IR1|1|2|U|3693
8IR1|1|2|U|3694
*
8IR1|1|2|A|3821
8IR1|1|2|U|3822
8IR1|1|2|G|3823
8IR1|1|2|A|3824
8IR1|1|2|A2M|3825
8IR1|1|2|C|3826

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8

Chain w

G Protein Nucleolar 2