J4_8IR1_010

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8IR1|1|2|C|1241, 8IR1|1|2|G|1242, 8IR1|1|2|G|1271, 8IR1|1|2|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|981
8IR1|1|2|U|982
8IR1|1|2|C|983
*
8IR1|1|2|G|1070
8IR1|1|2|C|1071
8IR1|1|2|C|1072
*
8IR1|1|2|G|1240
8IR1|1|2|C|1241
8IR1|1|2|G|1242
8IR1|1|2|C|1243
*
8IR1|1|2|G|1268
8IR1|1|2|G|1269
8IR1|1|2|A|1270
8IR1|1|2|G|1271
8IR1|1|2|C|1272
8IR1|1|2|G|1273

Current chains

Chain 2

28S rRNA

Nearby chains

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7