J4_8IR3_002

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8IR3|1|2|A|218, 8IR3|1|2|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR3|1|2|C|196
8IR3|1|2|A|197
8IR3|1|2|A|198
8IR3|1|2|G|199
*
8IR3|1|2|C|215
8IR3|1|2|C|216
8IR3|1|2|C|217
8IR3|1|2|A|218
8IR3|1|2|G|219
8IR3|1|2|C|220
8IR3|1|2|C|221
8IR3|1|2|C|222
*
8IR3|1|2|G|226
8IR3|1|2|A|227
8IR3|1|2|C|228
*
8IR3|1|2|G|240
8IR3|1|2|G|241
8IR3|1|2|U|242
8IR3|1|2|A|243
8IR3|1|2|G|244

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain h

60S ribosomal protein L26