J4_8IR3_006

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8IR3|1|2|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR3|1|2|G|2618
8IR3|1|2|G|2619
*
8IR3|1|2|U|2637
8IR3|1|2|G|2638
8IR3|1|2|U|2639
8IR3|1|2|G|2640
8IR3|1|2|A|2641
8IR3|1|2|A|2642
*
8IR3|1|2|U|2692
8IR3|1|2|G|2693
8IR3|1|2|G|2694
8IR3|1|2|A|2695
8IR3|1|2|A|2696
8IR3|1|2|A|2697
8IR3|1|2|G|2698
*
8IR3|1|2|U|2718
8IR3|1|2|C|2719

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain O

60S ribosomal protein L38

Chain a

60S ribosomal protein L19

Chain d

60S ribosomal protein L22