J4_8J1Z_002

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8J1Z_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0669

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8J1Z|1|a|G|297
8J1Z|1|a|G|298
8J1Z|1|a|A|299
8J1Z|1|a|A|300
8J1Z|1|a|G|301
*
8J1Z|1|a|C|316
8J1Z|1|a|G|317
8J1Z|1|a|C|318
8J1Z|1|a|G|319
*
8J1Z|1|a|C|323
8J1Z|1|a|A|324
8J1Z|1|a|G|325
*
8J1Z|1|a|C|337
8J1Z|1|a|G|338
8J1Z|1|a|U|339
8J1Z|1|a|A|340
8J1Z|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24