J4_8J1Z_005

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8J1Z|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8J1Z_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.075

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8J1Z|1|a|G|1310
8J1Z|1|a|G|1311
8J1Z|1|a|U|1312
8J1Z|1|a|U|1313
8J1Z|1|a|C|1314
*
8J1Z|1|a|G|1338
8J1Z|1|a|G|1339
8J1Z|1|a|U|1340
8J1Z|1|a|G|1341
8J1Z|1|a|A|1342
8J1Z|1|a|G|1343
*
8J1Z|1|a|C|1404
8J1Z|1|a|U|1405
*
8J1Z|1|a|A|1597
8J1Z|1|a|A|1598
8J1Z|1|a|U|1599
8J1Z|1|a|C|1600
8J1Z|1|a|G|1601
8J1Z|1|a|U|1602
8J1Z|1|a|A|1603
8J1Z|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23