J4_8JDJ_005

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8JDJ|1|D|G|1269, 8JDJ|1|D|A|1270, 8JDJ|1|D|G|1271, 8JDJ|1|D|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|C|981
8JDJ|1|D|U|982
8JDJ|1|D|C|983
*
8JDJ|1|D|G|1070
8JDJ|1|D|C|1071
8JDJ|1|D|C|1072
*
8JDJ|1|D|G|1240
8JDJ|1|D|C|1241
8JDJ|1|D|G|1242
8JDJ|1|D|C|1243
*
8JDJ|1|D|G|1268
8JDJ|1|D|G|1269
8JDJ|1|D|A|1270
8JDJ|1|D|G|1271
8JDJ|1|D|C|1272
8JDJ|1|D|G|1273

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain L

60S ribosomal protein L7

Chain g

60S ribosomal protein L29