J4_8JDK_005

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8JDK|1|D|G|1269, 8JDK|1|D|A|1270, 8JDK|1|D|G|1271, 8JDK|1|D|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|C|981
8JDK|1|D|U|982
8JDK|1|D|C|983
*
8JDK|1|D|G|1070
8JDK|1|D|C|1071
8JDK|1|D|C|1072
*
8JDK|1|D|G|1240
8JDK|1|D|C|1241
8JDK|1|D|G|1242
8JDK|1|D|C|1243
*
8JDK|1|D|G|1268
8JDK|1|D|G|1269
8JDK|1|D|A|1270
8JDK|1|D|G|1271
8JDK|1|D|C|1272
8JDK|1|D|G|1273

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain L

60S ribosomal protein L7

Chain g

60S ribosomal protein L29