J4_8JDK_009

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8JDK|1|D|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|G|2618
8JDK|1|D|G|2619
*
8JDK|1|D|U|2637
8JDK|1|D|G|2638
8JDK|1|D|U|2639
8JDK|1|D|G|2640
8JDK|1|D|A|2641
8JDK|1|D|A|2642
*
8JDK|1|D|U|2692
8JDK|1|D|G|2693
8JDK|1|D|G|2694
8JDK|1|D|A|2695
8JDK|1|D|A|2696
8JDK|1|D|A|2697
8JDK|1|D|G|2698
*
8JDK|1|D|U|2718
8JDK|1|D|C|2719

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L19

Chain Z

60S ribosomal protein L22

Chain l

60S ribosomal protein L34

Chain p

60S ribosomal protein L38