J4_8JDK_010
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GAC(PSU)G*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8JDK_010 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1491
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8JDK|1|D|G|3634
8JDK|1|D|A|3635
8JDK|1|D|C|3636
8JDK|1|D|PSU|3637
8JDK|1|D|G|3638
*
8JDK|1|D|C|3650
8JDK|1|D|A|3651
8JDK|1|D|A|3652
8JDK|1|D|A|3653
8JDK|1|D|G|3654
*
8JDK|1|D|U|3690
8JDK|1|D|G|3691
8JDK|1|D|A|3692
8JDK|1|D|U|3693
8JDK|1|D|U|3694
*
8JDK|1|D|A|3821
8JDK|1|D|U|3822
8JDK|1|D|G|3823
8JDK|1|D|A|3824
8JDK|1|D|A2M|3825
8JDK|1|D|C|3826
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8
- Chain s
- 60S ribosomal protein L41
- Chain u
- 60S ribosomal protein L37a
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: