J4_8JDK_011
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(UY1)G
- Length
- 21 nucleotides
- Bulged bases
- 8JDK|1|D|UY1|3818
- QA status
- Modified nucleotides: UY1
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8JDK_011 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0988
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDK|1|D|C|3696
8JDK|1|D|U|3697
8JDK|1|D|G|3698
*
8JDK|1|D|C|3752
8JDK|1|D|G|3753
*
8JDK|1|D|C|3771
8JDK|1|D|U|3772
8JDK|1|D|U|3773
8JDK|1|D|A|3774
8JDK|1|D|A|3775
8JDK|1|D|G|3776
8JDK|1|D|G|3777
8JDK|1|D|U|3778
8JDK|1|D|A|3779
8JDK|1|D|G|3780
*
8JDK|1|D|U|3814
8JDK|1|D|G|3815
8JDK|1|D|A|3816
8JDK|1|D|A|3817
8JDK|1|D|UY1|3818
8JDK|1|D|G|3819
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain G
- 60S ribosomal protein L8
- Chain s
- 60S ribosomal protein L41
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: