J4_8JDL_004

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8JDL|1|D|G|1269, 8JDL|1|D|A|1270, 8JDL|1|D|G|1271, 8JDL|1|D|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|C|981
8JDL|1|D|U|982
8JDL|1|D|C|983
*
8JDL|1|D|G|1070
8JDL|1|D|C|1071
8JDL|1|D|C|1072
*
8JDL|1|D|G|1240
8JDL|1|D|C|1241
8JDL|1|D|G|1242
8JDL|1|D|C|1243
*
8JDL|1|D|G|1268
8JDL|1|D|G|1269
8JDL|1|D|A|1270
8JDL|1|D|G|1271
8JDL|1|D|C|1272
8JDL|1|D|G|1273

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain L

60S ribosomal protein L7

Chain g

60S ribosomal protein L29