J4_8JDL_008

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8JDL|1|D|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|G|2618
8JDL|1|D|G|2619
*
8JDL|1|D|U|2637
8JDL|1|D|G|2638
8JDL|1|D|U|2639
8JDL|1|D|G|2640
8JDL|1|D|A|2641
8JDL|1|D|A|2642
*
8JDL|1|D|U|2692
8JDL|1|D|G|2693
8JDL|1|D|G|2694
8JDL|1|D|A|2695
8JDL|1|D|A|2696
8JDL|1|D|A|2697
8JDL|1|D|G|2698
*
8JDL|1|D|U|2718
8JDL|1|D|C|2719

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L19

Chain Z

60S ribosomal protein L22

Chain l

60S ribosomal protein L34

Chain p

60S ribosomal protein L38