J4_8JDL_011

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

8JDL|1|D|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|C|4231
8JDL|1|D|U|4232
8JDL|1|D|A|4233
8JDL|1|D|A|4234
8JDL|1|D|G|4235
*
8JDL|1|D|U|4289
8JDL|1|D|U|4290
8JDL|1|D|G|4291
*
8JDL|1|D|C|4318
8JDL|1|D|C|4319
*
8JDL|1|D|G|4328
8JDL|1|D|G|4329
8JDL|1|D|G|4330

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L5

Chain Y

60S ribosomal protein L21

Chain t

60S ribosomal protein L36a