J4_8JSH_003
3D structure
- PDB id
- 8JSH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S-body-IF3 complex from Escherichia coli
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8JSH|1|g|C|576
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8JSH_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1505
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8JSH|1|g|G|575
8JSH|1|g|C|576
8JSH|1|g|G|577
*
8JSH|1|g|C|764
8JSH|1|g|G|765
8JSH|1|g|A|766
8JSH|1|g|A|767
8JSH|1|g|A|768
8JSH|1|g|G|769
*
8JSH|1|g|C|810
8JSH|1|g|C|811
8JSH|1|g|G|812
8JSH|1|g|U|813
8JSH|1|g|A|814
8JSH|1|g|A|815
8JSH|1|g|A|816
8JSH|1|g|C|817
8JSH|1|g|G|818
8JSH|1|g|A|819
8JSH|1|g|U|820
8JSH|1|g|G|821
*
8JSH|1|g|C|879
8JSH|1|g|C|880
Current chains
- Chain g
- 16S ribosomal RNA
Nearby chains
- Chain P
- 30S ribosomal protein S17
- Chain p
- 30S ribosomal protein S8
- Chain t
- Small ribosomal subunit protein uS12
- Chain u
- 30S ribosomal protein S15
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