J4_8K2A_002

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAGCCUGCG*CAAUUAAC*GUCAACC*GCA

Length

28 nucleotides

Bulged bases

8K2A|1|L1|U|702, 8K2A|1|L1|A|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|L1|U|666
8K2A|1|L1|A|667
8K2A|1|L1|A|668
8K2A|1|L1|G|669
8K2A|1|L1|C|670
8K2A|1|L1|C|671
8K2A|1|L1|U|672
8K2A|1|L1|G|673
8K2A|1|L1|C|674
8K2A|1|L1|G|675
*
8K2A|1|L1|C|698
8K2A|1|L1|A|699
8K2A|1|L1|A|700
8K2A|1|L1|U|701
8K2A|1|L1|U|702
8K2A|1|L1|A|703
8K2A|1|L1|A|704
8K2A|1|L1|C|705
*
8K2A|1|L1|G|751
8K2A|1|L1|U|752
8K2A|1|L1|C|753
8K2A|1|L1|A|754
8K2A|1|L1|A|755
8K2A|1|L1|C|756
8K2A|1|L1|C|757
*
8K2A|1|L1|G|766
8K2A|1|L1|C|767
8K2A|1|L1|A|768

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LW

Large ribosomal subunit protein uL23m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41

Chain Lu

Large ribosomal subunit protein uL29m

Chain Sf

Large ribosomal subunit protein mL65