J4_8K2A_003

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|L1|G|822
8K2A|1|L1|C|823
8K2A|1|L1|C|824
8K2A|1|L1|U|825
8K2A|1|L1|G|826
*
8K2A|1|L1|C|838
8K2A|1|L1|A|839
8K2A|1|L1|U|840
8K2A|1|L1|C|841
8K2A|1|L1|A|842
8K2A|1|L1|C|843
*
8K2A|1|L1|G|867
8K2A|1|L1|C|868
8K2A|1|L1|A|869
8K2A|1|L1|C|870
8K2A|1|L1|C|871
8K2A|1|L1|G|872
*
8K2A|1|L1|C|967
8K2A|1|L1|U|968
8K2A|1|L1|C|969
8K2A|1|L1|C|970
8K2A|1|L1|A|971
8K2A|1|L1|C|972

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sn

Small ribosomal subunit protein mS38