J4_8K2A_004

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8K2A|1|L1|U|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8K2A_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1454

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8K2A|1|L1|C|874
8K2A|1|L1|U|875
8K2A|1|L1|G|876
*
8K2A|1|L1|C|899
8K2A|1|L1|C|900
*
8K2A|1|L1|G|917
8K2A|1|L1|C|918
8K2A|1|L1|A|919
8K2A|1|L1|A|920
8K2A|1|L1|A|921
8K2A|1|L1|G|922
8K2A|1|L1|G|923
8K2A|1|L1|U|924
8K2A|1|L1|A|925
8K2A|1|L1|G|926
*
8K2A|1|L1|U|960
8K2A|1|L1|G|961
8K2A|1|L1|A|962
8K2A|1|L1|A|963
8K2A|1|L1|U|964
8K2A|1|L1|G|965

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sn

Small ribosomal subunit protein mS38