J4_8K2A_005

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CGUUCCAG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

8K2A|1|S1|U|64, 8K2A|1|S1|C|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|S1|C|51
8K2A|1|S1|A|52
8K2A|1|S1|A|53
8K2A|1|S1|G|54
*
8K2A|1|S1|C|61
8K2A|1|S1|G|62
8K2A|1|S1|U|63
8K2A|1|S1|U|64
8K2A|1|S1|C|65
8K2A|1|S1|C|66
8K2A|1|S1|A|67
8K2A|1|S1|G|68
*
8K2A|1|S1|C|153
8K2A|1|S1|A|154
8K2A|1|S1|C|155
*
8K2A|1|S1|G|164
8K2A|1|S1|A|165
8K2A|1|S1|A|166
8K2A|1|S1|A|167
8K2A|1|S1|C|168
8K2A|1|S1|A|169
8K2A|1|S1|G|170

Current chains

Chain S1

12S rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein uL14m

Chain SP

Small ribosomal subunit protein bS16m

Chain Sb

Small ribosomal subunit protein mS26

Chain Sj

Small ribosomal subunit protein mS34