J4_8K2A_006

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUUCACC*GAACA*UAG*CC

Length

19 nucleotides

Bulged bases

8K2A|1|S1|C|75

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|S1|G|70
8K2A|1|S1|A|71
8K2A|1|S1|G|72
8K2A|1|S1|U|73
8K2A|1|S1|U|74
8K2A|1|S1|C|75
8K2A|1|S1|A|76
8K2A|1|S1|C|77
8K2A|1|S1|C|78
*
8K2A|1|S1|G|102
8K2A|1|S1|A|103
8K2A|1|S1|A|104
8K2A|1|S1|C|105
8K2A|1|S1|A|106
*
8K2A|1|S1|U|142
8K2A|1|S1|A|143
8K2A|1|S1|G|144
*
8K2A|1|S1|C|150
8K2A|1|S1|C|151

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein bS16m

Chain SQ

Small ribosomal subunit protein uS17m

Chain Sa

Small ribosomal subunit protein mS25

Chain Sj

Small ribosomal subunit protein mS34