J4_8K2A_007
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 8K2A|1|S1|A|295, 8K2A|1|S1|A|456, 8K2A|1|S1|C|459, 8K2A|1|S1|C|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8K2A_007 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.2483
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8K2A|1|S1|G|294
8K2A|1|S1|A|295
8K2A|1|S1|G|296
*
8K2A|1|S1|C|405
8K2A|1|S1|A|406
8K2A|1|S1|A|407
8K2A|1|S1|U|408
8K2A|1|S1|A|409
8K2A|1|S1|G|410
*
8K2A|1|S1|C|451
8K2A|1|S1|C|452
8K2A|1|S1|C|453
8K2A|1|S1|U|454
8K2A|1|S1|A|455
8K2A|1|S1|A|456
8K2A|1|S1|A|457
8K2A|1|S1|C|458
8K2A|1|S1|C|459
8K2A|1|S1|U|460
8K2A|1|S1|C|461
8K2A|1|S1|A|462
*
8K2A|1|S1|U|485
8K2A|1|S1|C|486
Current chains
- Chain S1
- 12S rRNA
Nearby chains
- Chain SL
- Small ribosomal subunit protein uS12m
- Chain SO
- Small ribosomal subunit protein uS15m
- Chain SQ
- Small ribosomal subunit protein uS17m
- Chain SW
- Small ribosomal subunit protein bS21m
- Chain Sa
- Small ribosomal subunit protein mS25
- Chain Sm
- Small ribosomal subunit protein mS37
- Chain Sn
- Small ribosomal subunit protein mS38
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